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First commit with the code Hector shared with me

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LouisDevresse
2026-09-28 17:05:38 +02:00
parent 1f4317d330
commit f3b28ea2ea
190 changed files with 221495 additions and 2 deletions
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63
phenofit4/Abies_alba_BLeys2.species Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Abies alba</Name><!-- Berangere Leys 2014 unpublished -->
<Leaf Model="9"><!-- modify the model (2->9), V.V. -->
<t0>-122</t0>
<Vb>8.5</Vb>
<d>-19.17544</d>
<e>7.17991</e>
<Ccrit>128.974</Ccrit>
<Fcrit>27.851</Fcrit>
</Leaf>
<Flower Model="9"><!-- modify the model (2->9), V.V.-->
<t0>-122</t0>
<Vb>8.5</Vb>
<d>-19.17544</d>
<e>7.17991</e>
<Ccrit>128.974</Ccrit>
<Fcrit>27.851</Fcrit>
</Flower>
<FruitMaturation Model="1">
<aa>-23.79334</aa>
<bb>7.84431</bb>
<Fcrit>35.819</Fcrit>
<Top>0.27953</Top>
<matmoy>51.055</matmoy>
<sigma>2.44</sigma>
<pfe50>0.2</pfe50>
<photosType>2</photosType>
</FruitMaturation>
<Senescence Model="1"><!-- trick to have no senescence -->
<Fcrit>300</Fcrit>
<Tb>20</Tb>
<sigmaSen>0</sigmaSen>
</Senescence>
<CompoundBud>1</CompoundBud>
<LeafHabit>2</LeafHabit> <!-- 1: deciduous - 2: sempervirent-->
<LeafLifeSpan>11</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>NEEDLE_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-80</Tdeath>
<Frost>
<FHfrmax1>-12</FHfrmax1>
<FHfrmax2>-18</FHfrmax2>
<FHminfe>-3</FHminfe>
<FHminfl>-3</FHminfl>
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-16</FHtfemax>
<FHtflmax>-16</FHtflmax>
<FHpfemax>-9</FHpfemax>
<FHpflmax>-9</FHpflmax>
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="1">
<pp1>1000</pp1>
<pp2>1500</pp2>
</Drought>
<!-- <Evapotranspiration Model="1"/> not used anymore -->
</Provenance>
</Species>

67
phenofit4/Betula_pendula_DAsse.species Normal file
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<?xml version="1.0" encoding="UTF-8"?><!--parameterized by Daphné Asse in 2016-->
<Species>
<Provenance>
<Name>Betula_pendula</Name>
<Leaf Model="9"><!-- UniChill model ajusted on Phenoclim data 2007 to 2014 with 146 obs -->
<t0>-100.6</t0>
<Vb>12.21</Vb>
<d>-0.21</d>
<e>16.97</e>
<Ccrit>127.26</Ccrit>
<Fcrit>5</Fcrit>
</Leaf>
<Flower Model="9"><!-- UniChill model ajusted on Phenoclim data 2007 to 2014 with 100 obs -->
<t0>-70.4</t0>
<Vb>8.7</Vb>
<d>-17.95</d>
<e>6.78</e>
<Ccrit>128.3</Ccrit>
<Fcrit>22.1</Fcrit>
</Flower>
<FruitMaturation Model="1"><!-- Fructification_2Phases mimicking a Wang model ajusted on Phenoclim data 2016 with 8 obs -->
<aa>-40</aa>
<bb>1</bb>
<Fcrit>0.0001</Fcrit>
<Top>7.498</Top>
<matmoy>85.84</matmoy>
<sigma>3.025</sigma>
<pfe50>0.6</pfe50>
<photosType>3</photosType><!-- Wang Tmin = 0, Tmax= 40 -->
</FruitMaturation>
<Senescence Model="6"><!-- Delpierre model ajusted on Phenoclim data 2007 to 2014 with 155 obs -->
<Pb>12.10</Pb>
<Tb>18.4</Tb>
<alpha>0.89</alpha>
<beta>1.93</beta>
<Scrit>132.7</Scrit>
<sigmaSen>34.015</sigmaSen>
</Senescence>
<CompoundBud>1</CompoundBud> <!-- structure des bourgeons mixte ou pas -->
<LeafHabit>1</LeafHabit> <!-- caduque ou sempervirent -->
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>BROAD_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-70</Tdeath> <!-- Temperature letale de l'arbre cambium -->
<Frost>
<FHfrmax1>-15</FHfrmax1> <!-- frost harding growing fruit -->
<FHfrmax2>-30</FHfrmax2> <!-- frost harding fruit mature -->
<FHminfe>-3.2</FHminfe> <!-- resistance minimum au moment du débourrment -->
<FHminfl>-3</FHminfl> <!-- resistance minimum au moment de la floraison -->
<Te1>10</Te1> <!-- on ne modifie pas concerne la temperature-->
<Te2>-16</Te2> <!-- on ne modifie pas concerne la temperature -->
<FHtfemax>-14</FHtfemax> <!-- 40% of frost harding pendant la dormance feuilles -->
<FHtflmax>-15.2</FHtflmax> <!-- 40% frost harding pendant la dormance fleur -->
<FHpfemax>-21</FHpfemax> <!-- 60% frost harding photopériode feuille -->
<FHpflmax>-22.8</FHpflmax><!-- 60% frost harding photopériode fleur -->
<NL1>10</NL1> <!-- on ne modifie pas concerne la photopériode -->
<NL2>16</NL2> <!-- on ne modifie pas concerne la photopériode -->
</Frost>
<Drought Model="1">
<pp1>410</pp1><!-- min annual prec -->
<pp2>2300</pp2><!-- max annual prec (1700 avant) -->
</Drought>
<!-- <Evapotranspiration Model="2"/> not used anymore -->
</Provenance>
</Species>

65
phenofit4/Corylus_avellana_DAsse.species Normal file
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<?xml version="1.0" encoding="UTF-8"?><!--parameterized by Daphné Asse in 2016-->
<Species>
<Provenance>
<Name>Corylus_avellana</Name>
<Leaf Model="9"><!-- UniChill model ajusted on Phenoclim data 2007 to 2014 with 128 obs -->
<t0>-115.2</t0>
<Vb>15.99</Vb>
<d>-0.38</d>
<e>8.61</e>
<Ccrit>145.24</Ccrit>
<Fcrit>10.58</Fcrit>
</Leaf>
<Flower Model="9"><!-- UniChill model ajusted on Phenoclim data 2007 to 2014 with 127 obs -->
<t0>-74</t0><!-- à l'origine la valeur était -75.1 mais ça ne fonctionnait pas -->
<Vb>9.65</Vb>
<d>-0.23</d>
<e>15.24</e>
<Ccrit>55.26</Ccrit>
<Fcrit>2.89</Fcrit>
</Flower>
<FruitMaturation Model="1"><!-- Fructification_2Phases mimicking a Wang model ajusted on Phenoclim data 2016 with 8 obs -->
<aa>-40</aa>
<bb>1</bb>
<Fcrit>0.0001</Fcrit>
<Top>17.68</Top>
<matmoy>161.31</matmoy>
<sigma>4.827</sigma>
<pfe50>0.6</pfe50>
<photosType>3</photosType><!-- Wang Tmin = 0, Tmax= 40 -->
</FruitMaturation>
<Senescence Model="2"><!-- Threshold inf model ajusted on Phenoclim data 2007 to 2014 with 19 obs -->
<Fcrit>63.316</Fcrit>
<d_s>40</d_s>
<e_s>17.83</e_s>
<sigmaSen>5</sigmaSen>
</Senescence>
<CompoundBud>1</CompoundBud> <!-- structure des bourgeons mixte ou pas -->
<LeafHabit>1</LeafHabit> <!-- caduque ou sempervirent -->
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>BROAD_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-50</Tdeath> <!-- Temperature letale de l'arbre cambium -->
<Frost>
<FHfrmax1>-6</FHfrmax1> <!-- frost harding growing fruit -->
<FHfrmax2>-30</FHfrmax2> <!-- frost harding fruit mature -->
<FHminfe>-4</FHminfe> <!-- resistance minimum au moment du débourrment -->
<FHminfl>-4</FHminfl> <!-- resistance minimum au moment de la floraison -->
<Te1>10</Te1> <!-- on ne modifie pas concerne la temperature-->
<Te2>-16</Te2> <!-- on ne modifie pas concerne la temperature -->
<FHtfemax>-10.4</FHtfemax> <!-- 40% of frost harding pendant la dormance feuilles -->
<FHtflmax>-8</FHtflmax> <!-- 40% frost harding pendant la dormance fleur -->
<FHpfemax>-15.6</FHpfemax> <!-- 60% frost harding photopériode feuille -->
<FHpflmax>-12</FHpflmax><!-- 60% frost harding photopériode fleur -->
<NL1>10</NL1> <!-- on ne modifie pas concerne la photopériode -->
<NL2>16</NL2> <!-- on ne modifie pas concerne la photopériode -->
</Frost>
<Drought Model="1">
<pp1>520</pp1><!-- min annual prec -->
<pp2>2800</pp2><!-- avant (1800) max annual prec -->
</Drought>
<!-- <Evapotranspiration Model="2"/> not used anymore -->
</Provenance>
</Species>

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phenofit4/Fagus_sylvatica_EvolLett2019.species Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Fagus_sylvatica_Global</Name><!-- Julie Gauzere Evolution Letters 2019 -->
<Leaf Model="9"><!-- UniChill model ajusted on RENECOFOR data JG Fev 2016 -->
<t0>-62</t0>
<Vb>13.0</Vb>
<d>-0.08</d>
<e>13.0</e>
<Ccrit>73.7</Ccrit>
<Fcrit>37.3</Fcrit>
</Leaf>
<Flower Model="9"><!-- deltaF =3 - JG 04/2016 -->
<t0>-62</t0>
<Vb>13.0</Vb>
<d>-0.08</d>
<e>13.0</e>
<Ccrit>73.7</Ccrit>
<Fcrit>40.3</Fcrit>
</Flower>
<FruitMaturation Model="1"><!-- Manu Gritti donnees Vosges-->
<aa>-0.2</aa>
<bb>14.7297</bb>
<Fcrit>9</Fcrit>
<Top>5.002</Top>
<matmoy>100</matmoy>
<sigma>3.7</sigma>
<pfe50>0.6</pfe50>
<photosType>2</photosType>
</FruitMaturation>
<Senescence Model="6"><!-- Anne fit Aug 2012 on European data -->
<Pb>13.38</Pb>
<Tb>29.95</Tb>
<alpha>1</alpha>
<beta>2</beta>
<Scrit>570.6</Scrit>
<sigmaSen>0</sigmaSen>
</Senescence>
<CompoundBud>2</CompoundBud>
<LeafHabit>1</LeafHabit>
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>BROAD_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-30</Tdeath>
<Frost>
<FHfrmax1>-6</FHfrmax1>
<FHfrmax2>-20</FHfrmax2>
<FHminfe>-5.3</FHminfe>
<FHminfl>-5.3</FHminfl>
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-8</FHtfemax>
<FHtflmax>-8</FHtflmax>
<FHpfemax>-12</FHpfemax>
<FHpflmax>-12</FHpflmax>
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="6">
<ppextremelow>450</ppextremelow><!-- 1% quantile -->
<pplow>490</pplow><!-- 5% quantile -->
<pphigh>3000</pphigh><!-- 95% quantile -->
<ppextremehigh>3500</ppextremehigh><!-- 99% -->
</Drought>
<!--<Evapotranspiration Model="1"/>-->
</Provenance>
</Species>

67
phenofit4/Fraxinus_excelsior_DAsse.species Normal file
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<?xml version="1.0" encoding="UTF-8"?><!--parameterized by Daphné Asse in 2016-->
<Species>
<Provenance>
<Name>Fraxinus_excelsior</Name>
<Leaf Model="9"><!-- UniChill model ajusted on Phenoclim data 2007 to 2014 with 149 obs -->
<t0>-77.3</t0>
<Vb>10.61</Vb>
<d>-0.20</d>
<e>16.17</e>
<Ccrit>124.94</Ccrit>
<Fcrit>9.02</Fcrit>
</Leaf>
<Flower Model="9"><!-- UniChill model ajusted on Phenoclim data 2007 to 2014 with 136 obs -->
<t0>-77.2</t0>
<Vb>9.74</Vb>
<d>-0.38</d>
<e>6.82</e>
<Ccrit>118.13</Ccrit>
<Fcrit>21.66</Fcrit>
</Flower>
<FruitMaturation Model="1"><!-- Wang model ajusted on Phenoclim data 2016 with 6 obs -->
<aa>-40</aa>
<bb>1</bb>
<Fcrit>0.0001</Fcrit>
<Top>9.38</Top>
<matmoy>39.29</matmoy>
<sigma>1.05</sigma>
<pfe50>0.6</pfe50>
<photosType>3</photosType>
</FruitMaturation>
<Senescence Model="6"><!-- Delpierre model ajusted on Phenoclim data 2007 to 2014 with 27 obs -->
<Pb>15.34</Pb>
<Tb>27.9</Tb>
<alpha>0.24</alpha>
<beta>1.6</beta>
<Scrit>65.006</Scrit>
<sigmaSen>1.987</sigmaSen>
</Senescence>
<CompoundBud>1</CompoundBud> <!-- structure des bourgeons mixte ou pas -->
<LeafHabit>1</LeafHabit> <!-- caduque ou sempervirent -->
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>BROAD_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-50</Tdeath> <!-- Temperature letale de l'arbre cambium -->
<Frost>
<FHfrmax1>-15</FHfrmax1> <!-- frost harding growing fruit -->
<FHfrmax2>-30</FHfrmax2> <!-- frost harding fruit mature -->
<FHminfe>-2.5</FHminfe> <!-- resistance minimum au moment du débourrment -->
<FHminfl>-2</FHminfl> <!-- resistance minimum au moment de la floraison -->
<Te1>10</Te1> <!-- on ne modifie pas concerne la temperature-->
<Te2>-16</Te2> <!-- on ne modifie pas concerne la temperature -->
<FHtfemax>-10.8</FHtfemax> <!-- 40% of frost harding pendant la dormance feuilles -->
<FHtflmax>-8</FHtflmax> <!-- 40% frost harding pendant la dormance fleur -->
<FHpfemax>-16.2</FHpfemax> <!-- 60% frost harding photopériode feuille -->
<FHpflmax>-12</FHpflmax><!-- 60% frost harding photopériode fleur -->
<NL1>10</NL1> <!-- on ne modifie pas concerne la photopériode -->
<NL2>16</NL2> <!-- on ne modifie pas concerne la photopériode -->
</Frost>
<Drought Model="1">
<pp1>350</pp1><!-- min annual prec -->
<pp2>2600</pp2><!-- max annual prec (avant 1900)-->
</Drought>
<!-- <Evapotranspiration Model="2"/> not used anymore -->
</Provenance>
</Species>

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phenofit4/Larix_decidua_DAsse.species Normal file
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<?xml version="1.0" encoding="UTF-8"?><!--parameterized by Daphné Asse in 2016-->
<Species>
<Provenance>
<Name>Larix_decidua</Name>
<Leaf Model="9"><!-- UniChill model ajusted on Phenoclim data 2007 to 2014 with 159 obs -->
<t0>-101</t0>
<Vb>18.33</Vb>
<d>-37.39</d>
<e>6.22</e>
<Ccrit>183.787</Ccrit>
<Fcrit>6</Fcrit>
</Leaf>
<Flower Model="9"><!-- UniChill model ajusted on Phenoclim data 2007 to 2014 with 144 obs -->
<t0>-65.3</t0>
<Vb>11.11</Vb>
<d>-40</d>
<e>6.42</e>
<Ccrit>148.02</Ccrit>
<Fcrit>9.99</Fcrit>
</Flower>
<FruitMaturation Model="1"><!-- Fructification_2Phases mimicking a Wang model ajusted on Phenoclim data 2016 with 7 obs -->
<aa>-40</aa>
<bb>1</bb>
<Fcrit>0</Fcrit> <!-- anvant on avait mis 0.0001 -->
<Top>4.12</Top>
<matmoy>30.47</matmoy>
<sigma>0.5705</sigma>
<pfe50>0.6</pfe50>
<photosType>3</photosType><!-- Wang Tmin = 0, Tmax= 40 -->
</FruitMaturation>
<Senescence Model="6"><!-- Delpierre model ajusted on Phenoclim data 2007 to 2014 with 155 obs -->
<Pb>12.82</Pb>
<Tb>30</Tb>
<alpha>1.46</alpha>
<beta>2</beta>
<Scrit>735.1</Scrit>
<sigmaSen>75.29</sigmaSen>
</Senescence>
<CompoundBud>1</CompoundBud> <!-- structure des bourgeons mixte ou pas -->
<LeafHabit>1</LeafHabit> <!-- caduque ou sempervirent -->
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>NEEDLE_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-70</Tdeath> <!-- Temperature letale de l'arbre cambium -->
<Frost>
<FHfrmax1>-15</FHfrmax1> <!-- frost harding growing fruit -->
<FHfrmax2>-40</FHfrmax2> <!-- frost harding fruit mature -->
<FHminfe>-6.3</FHminfe> <!-- resistance minimum au moment du débourrment -->
<FHminfl>-12.5</FHminfl> <!-- resistance minimum au moment de la floraison Berrand Steiner 1985-->
<Te1>10</Te1> <!-- on ne modifie pas concerne la temperature-->
<Te2>-16</Te2> <!-- on ne modifie pas concerne la temperature -->
<FHtfemax>-16.56</FHtfemax> <!-- 40% of frost harding pendant la dormance feuilles -->
<FHtflmax>-16</FHtflmax> <!-- 40% frost harding pendant la dormance fleur (avant -10) -->
<FHpfemax>-24.84</FHpfemax> <!-- 60% frost harding photopériode feuille -->
<FHpflmax>-15</FHpflmax><!-- 60% frost harding photopériode fleur -->
<NL1>10</NL1> <!-- on ne modifie pas concerne la photopériode -->
<NL2>16</NL2> <!-- on ne modifie pas concerne la photopériode -->
</Frost>
<Drought Model="1">
<pp1>480</pp1><!-- min annual prec -->
<pp2>1890</pp2><!-- max annual prec avant 1650 -->
</Drought>
<!-- <Evapotranspiration Model="2"/> not used anymore -->
</Provenance>
</Species>

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phenofit4/Picea_abies_partialcalibration.species Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Picea_abies</Name>
<Leaf Model="9">
<t0>-100.4</t0>
<Vb>13.88</Vb>
<d>-0.18</d>
<e>18.05</e>
<Ccrit>174.13</Ccrit>
<Fcrit>8.233</Fcrit>
</Leaf>
<Flower Model="9">
<t0>-87.1063526161088</t0>
<Vb>5.66562026886392</Vb>
<d>-1.08072575837903</d>
<e>7.50457347490627</e>
<Ccrit>92.6455665694971</Ccrit>
<Fcrit>18.3541019167027</Fcrit>
</Flower>
<FruitMaturation Model="1">
<aa>1.01805798274377</aa>
<bb>14.3604741732385</bb>
<Fcrit>6.19174021397882</Fcrit>
<Top>8.62394112778655</Top>
<matmoy>9.92934842541844</matmoy>
<sigma>4.80862034883245</sigma>
<pfe50>0.501648258671778</pfe50>
<photosType>3</photosType>
</FruitMaturation>
<Senescence Model="1">
<!-- trick to have no senescence -->
<Fcrit>300</Fcrit>
<Tb>20</Tb>
<sigmaSen>0</sigmaSen>
</Senescence>
<CompoundBud>1</CompoundBud>
<LeafHabit>2</LeafHabit>
<LeafLifeSpan>6</LeafLifeSpan>
<LeafType>NEEDLE_LEAF</LeafType>
<Tdeath>-70</Tdeath>
<Frost>
<FHfrmax1>-20</FHfrmax1>
<FHfrmax2>-50</FHfrmax2>
<FHminfe>-6</FHminfe>
<FHminfl>-10</FHminfl>
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-45</FHtfemax>
<FHtflmax>-45</FHtflmax>
<FHpfemax>-15</FHpfemax>
<FHpflmax>-15</FHpflmax>
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="6">
<ppextremelow>344.112661343672</ppextremelow>
<pplow>467.37809256628</pplow>
<pphigh>2423.48746989956</pphigh>
<ppextremehigh>2965.69612734187</ppextremehigh>
</Drought>
</Provenance>
</Species>

68
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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Pinus_pinaster</Name>
<Leaf Model="9">
<!-- modify the model (2->9) to test whether it give the same results or not -->
<t0>-19.9120532812255</t0>
<Vb>11.4212311187868</Vb>
<d>-1.29338941507603</d>
<e>7.44565776543832</e>
<Ccrit>7.39680915750549</Ccrit>
<Fcrit>115.189816124876</Fcrit>
</Leaf>
<Flower Model="9">
<!-- modify the model (2->9) to test whether it give the same results or not -->
<t0>-58.0106600346871</t0>
<Vb>11.5025687361977</Vb>
<d>-0.836038581752403</d>
<e>10.8000741499587</e>
<Ccrit>5.60435150652661</Ccrit>
<Fcrit>34.0039780188405</Fcrit>
</Flower>
<FruitMaturation Model="2">
<Tb>13.8139935586641</Tb>
<Fcrit>130.524487725994</Fcrit>
<sigma>94.8831530829199</sigma>
<pfe50>0.465102380251746</pfe50>
</FruitMaturation>
<Senescence Model="1">
<!-- trick to have no senescence -->
<Fcrit>300</Fcrit>
<Tb>20</Tb>
<sigmaSen>0</sigmaSen>
</Senescence>
<CompoundBud>1</CompoundBud>
<LeafHabit>2</LeafHabit>
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>NEEDLE_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-70</Tdeath>
<Frost>
<FHfrmax1>-13.3633941218525</FHfrmax1>
<FHfrmax2>-17.267509761372</FHfrmax2>
<FHminfe>-3.2319627706841</FHminfe>
<FHminfl>-4.58420945540219</FHminfl>
<Te1>17.1443826274414</Te1>
<Te2>-22.7544551224778</Te2>
<FHtfemax>-7.65515925101664</FHtfemax>
<FHtflmax>-5.56292130620423</FHtflmax>
<FHpfemax>-15.6145863209158</FHpfemax>
<FHpflmax>-12.7518964387919</FHpflmax>
<NL1>5.5327493995313</NL1>
<NL2>10.6775614892843</NL2>
</Frost>
<Drought Model="6">
<ppextremelow>153.511044714805</ppextremelow>
<!-- 0th quantile OR use 429 1th quantile -->
<pplow>469.333534814112</pplow>
<!-- 5th quantile -->
<pphigh>2258.82036739612</pphigh>
<!-- 95th quantile -->
<ppextremehigh>3632.70919270213</ppextremehigh>
<!-- 100th quantile OR use 2079 99th quantile -->
</Drought>
<!-- <Evapotranspiration Model="1"/> not used anymore -->
</Provenance>
</Species>

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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Pinus_sylvestris</Name>
<Leaf Model="2"><!-- parameters from Kramer 1994 Journal of applied Ecology 31, Chap 3 these) -->
<t0>-61</t0> <!-- Nov 1st -->
<a>0.06</a>
<b>1</b>
<c>6</c>
<d>-0.11</d>
<e>37</e>
<Ccrit>85</Ccrit>
<Fcrit>2.4</Fcrit>
</Leaf>
<Flower Model="2">
<t0>-61</t0> <!-- Nov 1st -->
<a>0.06</a>
<b>1</b>
<c>6</c>
<d>-0.11</d>
<e>37</e>
<Ccrit>85</Ccrit>
<Fcrit>2.2</Fcrit>
</Flower>
<FruitMaturation Model="2">
<Tb>5</Tb>
<Fcrit>500</Fcrit>
<sigma>57</sigma>
<pfe50>0.6</pfe50>
</FruitMaturation>
<Senescence Model="1"><!-- trick to have no senescence -->
<Fcrit>300</Fcrit>
<Tb>20</Tb>
<sigmaSen>0</sigmaSen>
</Senescence>
<CompoundBud>3</CompoundBud>
<LeafHabit>2</LeafHabit>
<LeafLifeSpan>3</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>NEEDLE_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-70</Tdeath>
<Frost>
<FHfrmax1>-10</FHfrmax1>
<FHfrmax2>-50</FHfrmax2>
<FHminfe>-5</FHminfe>
<FHminfl>-10</FHminfl>
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-47</FHtfemax>
<FHtflmax>-47</FHtflmax>
<FHpfemax>-18.5</FHpfemax>
<FHpflmax>-18.5</FHpflmax>
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="6">
<ppextremelow>250</ppextremelow><!-- 0th quantile OR use 429 1th quantile -->
<pplow>478</pplow><!-- 5th quantile -->
<pphigh>1300</pphigh><!-- 95th quantile -->
<ppextremehigh>3465</ppextremehigh> <!-- 100th quantile OR use 2079 99th quantile -->
</Drought>
<!-- <Evapotranspiration Model="1"/> not used anymore -->
</Provenance>
</Species>

66
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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Pseudostuga_menziessi</Name><!-- Marta Benito-Garzon post-doc 2005 unpublised -->
<Leaf Model="2">
<t0>-122</t0>
<a>0.66</a>
<b>-13.00</b> <!-- Changed from -17.16 to -13.00 according to Isabelle -->
<c>-7.55</c>
<d>-0.6</d>
<e>9.5</e>
<Ccrit>194.04</Ccrit>
<Fcrit>28.7</Fcrit>
</Leaf>
<Flower Model="2">
<t0>-122</t0>
<a>0.48</a>
<b>-13.00</b> <!-- Changed from -16.71 to -13.00 according to Isabelle -->
<c>-13.89</c>
<d>-40</d>
<e>8.43</e>
<Ccrit>190.89069</Ccrit>
<Fcrit>18.7</Fcrit>
</Flower>
<FruitMaturation Model="1">
<aa>-4.336</aa>
<bb>8.7917</bb>
<Fcrit>66.87</Fcrit>
<Top>28.955</Top>
<matmoy>22.2</matmoy>
<sigma>3.6</sigma>
<pfe50>0.4</pfe50>
<photosType>2</photosType><!-- Wang Tmin = -5, Tmax= 40 -->
</FruitMaturation>
<Senescence Model="1"><!-- trick to have no senescence -->
<Fcrit>300</Fcrit>
<Tb>20</Tb>
<sigmaSen>0</sigmaSen>
</Senescence>
<CompoundBud>1</CompoundBud><!-- 1 seperate / 2 mixed -->
<LeafHabit>2</LeafHabit><!-- 1 deciduous / 2 evergreen -->
<LeafLifeSpan>6</LeafLifeSpan> <!-- nb years -->
<LeafType>NEEDLE_LEAF</LeafType> <!-- NEEDLE_LEAF / BROAD_LEAF -->
<Tdeath>-80</Tdeath>
<Frost>
<FHfrmax1>-10</FHfrmax1>
<FHfrmax2>-50</FHfrmax2>
<FHminfe>-2</FHminfe> <!-- https://doi.org/10.1016/j.foreco.2023.121611 -->
<FHminfl>-2</FHminfl> <!-- https://doi.org/10.1016/j.foreco.2023.121611 -->
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-28</FHtfemax> <!-- https://doi.org/10.1016/j.foreco.2023.121611 -->
<FHtflmax>-28</FHtflmax> <!-- https://doi.org/10.1016/j.foreco.2023.121611 -->
<FHpfemax>-11</FHpfemax>
<FHpflmax>-11</FHpflmax>
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="1">
<pp1>500</pp1> <!-- European Atlas of Forest Tree Species pg. 147 -->
<pp2>1910</pp2> <!-- European Atlas of Forest Tree Species pg. 147 -->
</Drought>
</Provenance>
</Species>

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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<!-- F. Tauc 2022 -->
<Provenance>
<Name>QI</Name>
<Leaf Model="9"><!-- obtenu avec PMP et les données TEMPO -->
<t0>-103.2</t0>
<Vb>20.56199</Vb> <!-- anormalement eleve pour de la dormance -->
<d>-40</d>
<e>13.91902</e>
<Ccrit>213.245</Ccrit>
<Fcrit>4.962</Fcrit>
</Leaf>
<Flower Model="9"><!-- obtenu avec PMP et les données TEMPO. TROP SEVERE -->
<t0>-103.2</t0>
<Vb>20.56199</Vb> <!-- anormalement eleve pour de la dormance -->
<d>-40</d>
<e>13.91902</e>
<Ccrit>213.245</Ccrit>
<Fcrit>12.616</Fcrit>
</Flower>
<FruitMaturation Model="1"><!-- values coming from PMP (Puechabon + tempo)-->
<aa>-2</aa>
<bb>12</bb>
<Fcrit>28.5714</Fcrit>
<Top>24</Top>
<matmoy>83.33</matmoy>
<sigma>5.2</sigma><!-- A CALCULER !! TATONNER DANS PMP POUR DETERMINER A QUOI CORRESPONDENT 15 JOURS EN UNITE TEMPERATURE. environ 15.6 sans Puechabon puis divise par 3 -->
<pfe50>0.6</pfe50>
<photosType>2</photosType><!-- j'ai vu dans FitlibFructification2phases que Tmin était à -5 pour type2 et 0 pour type 3.-->
</FruitMaturation>
<Senescence Model="1"> <!-- Trick to have no senescence (initially Model="4", modified by V. V.) -->
<Fcrit>500</Fcrit>
<Tb>30</Tb>
<sigmaSen>0</sigmaSen>
</Senescence>
<CompoundBud>2</CompoundBud><!-- Retrouver les infos pour permettre un t0 au stade 15 pour les feuilles. Est-ce que marche bien ? -->
<LeafHabit>2</LeafHabit>
<LeafLifeSpan>2</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>BROAD_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-25</Tdeath><!-- -35 previous value, European Altlas of forest tree species, Q. ilex can sustain a few days -24°C -->
<Frost>
<FHfrmax1>-8</FHfrmax1>
<FHfrmax2>-10</FHfrmax2>
<FHminfe>-6</FHminfe>
<FHminfl>-8</FHminfl>
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-12</FHtfemax>
<FHtflmax>-12</FHtflmax>
<FHpfemax>-15</FHpfemax>
<FHpflmax>-15</FHpflmax>
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="1">
<pp1>300</pp1>
<pp2>1500</pp2>
</Drought>
<!-- <Evapotranspiration Model="3"/> not used anymore -->
</Provenance>
</Species>

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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Quercus_petrea_France</Name>
<Leaf Model="9"><!-- Unichill_Threshold model number are listed in Fit4SpeciesLoader.java -->
<t0>-63</t0>
<Vb>13.4</Vb>
<d>-0.41</d>
<e>9.0</e>
<Ccrit>116.7</Ccrit>
<Fcrit>23.0</Fcrit>
</Leaf>
<Flower Model="9"><!-- Unichill_Threshold -->
<t0>-63</t0>
<Vb>13.4</Vb>
<d>-0.41</d>
<e>9.0</e>
<Ccrit>116.7</Ccrit>
<Fcrit>29.0</Fcrit>
</Flower>
<FruitMaturation Model="1"><!-- TWO_PHASES -->
<aa>-0.67</aa>
<bb>10.32</bb>
<Fcrit>87.12</Fcrit>
<Top>5</Top>
<matmoy>66.3</matmoy>
<sigma>4.59</sigma>
<pfe50>0.6</pfe50>
<photosType>2</photosType>
</FruitMaturation>
<Senescence Model="7"><!-- modele DELPIERRE2 fitte par A Duputie sur France entiere, 241 observations (Renecofor + Amance + Biogeco + Clermont Ferrand -->
<Pb>11.27</Pb>
<Tb>22.21</Tb>
<alpha>2</alpha>
<beta>0</beta>
<Scrit>1340</Scrit>
<sigmaSen>150</sigmaSen><!-- arbitrary value to check -->
</Senescence>
<CompoundBud>2</CompoundBud>
<LeafHabit>1</LeafHabit>
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>BROAD_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-90</Tdeath>
<Frost>
<FHfrmax1>-12</FHfrmax1>
<FHfrmax2>-50</FHfrmax2>
<FHminfe>-5.4</FHminfe><!-- Lenz -->
<FHminfl>-4.4</FHminfl><!-- Lenz -->
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-10</FHtfemax><!-- Lenz -->
<FHtflmax>-10</FHtflmax><!-- Lenz -->
<FHpfemax>-14</FHpfemax><!-- Lenz -->
<FHpflmax>-14</FHpflmax><!-- Lenz -->
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="6">
<ppextremelow>460</ppextremelow><!-- 1% quantile -->
<pplow>490</pplow><!-- 5% quantile -->
<pphigh>3000</pphigh><!-- 95% quantile -->
<ppextremehigh>3500</ppextremehigh><!-- 99% -->
</Drought>
<!-- <Evapotranspiration Model="2"/> not used anymore -->
</Provenance>
</Species>

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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Quercus pubescens O3HP</Name>
<Leaf Model="2"><!-- O3HP data, EFF=0.99 n=5, file Back_up_Berangere_Leys\fit_model_pheno\Qpub.zip\Qpub\sorties PMP\sorties Qpub 11-15\modèles PMP Qpub 11-15 summary.xlsx -->
<t0>-91</t0>
<a>0.90812</a>
<b>-24.83009</b>
<c>-4.47239</c>
<d>-0.94992</d>
<e>3.80457</e>
<Ccrit>123.699</Ccrit>
<Fcrit>55.651</Fcrit>
</Leaf>
<Flower Model="2">
<t0>-91</t0>
<a>0.90812</a>
<b>-24.83009</b>
<c>-4.47239</c>
<d>-0.94992</d>
<e>3.80457</e>
<Ccrit>123.699</Ccrit>
<Fcrit>66.355</Fcrit>
</Flower>
<FruitMaturation Model="2">
<Tb>18.30058</Tb>
<Fcrit>256.409</Fcrit>
<sigma>0.6</sigma>
<pfe50>0.5</pfe50>
</FruitMaturation>
<Senescence Model="6">
<Pb>11.70992</Pb>
<Tb>15.16968</Tb>
<alpha>0</alpha>
<beta>2</beta>
<Scrit>16.49</Scrit>
<timelag>5.6</timelag>
<sigmaSen>150</sigmaSen> <!-- arbitrary value to check -->
</Senescence>
<CompoundBud>2</CompoundBud>
<LeafHabit>1</LeafHabit>
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>BROAD_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-45</Tdeath>
<Frost>
<FHfrmax1>-10</FHfrmax1>
<FHfrmax2>-15</FHfrmax2>
<FHminfe>-6</FHminfe>
<FHminfl>-8</FHminfl>
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-30</FHtfemax>
<FHtflmax>-30</FHtflmax>
<FHpfemax>-15</FHpfemax>
<FHpflmax>-15</FHpflmax>
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="1">
<pp1>830</pp1>
<pp2>1010</pp2>
</Drought>
<!-- <Evapotranspiration Model="3"/> not used anymore -->
</Provenance>
</Species>

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<?xml version="1.0" encoding="UTF-8"?>
<Species>
<Provenance>
<Name>Quercus_robur_Global</Name>
<Leaf Model="5"><!-- PEP725 data + TEMPO data -->
<t0>-122</t0> <!-- pas retrouvé fichiers! -->
<Topt>2.68</Topt>
<Tmin>-49.93</Tmin>
<Tmax>44.22</Tmax>
<d>-0.17</d>
<e>22.72</e>
<Ccrit>169.87</Ccrit>
<Fcrit>4.74</Fcrit>
</Leaf>
<Flower Model="5"><!-- PEP725 data + TEMPO data -->
<t0>-122</t0> <!-- pas retrouvé fichiers! -->
<Topt>2.68</Topt>
<Tmin>-49.93</Tmin>
<Tmax>44.22</Tmax>
<d>-0.17</d>
<e>22.72</e>
<Ccrit>169.87</Ccrit>
<Fcrit>8.74</Fcrit>
</Flower>
<FruitMaturation Model="1"><!-- La Joux ONF data -->
<aa>-0.21</aa>
<bb>-0.84</bb>
<Fcrit>72.11</Fcrit>
<Top>5</Top>
<matmoy>68.61</matmoy>
<sigma>4.61</sigma>
<pfe50>0.6</pfe50>
<photosType>2</photosType>
</FruitMaturation>
<Senescence Model="6"> <!-- PEP725 data + TEMPO data , or equivalently 7 (because beta=0) -->
<Pb>12.3</Pb>
<Tb>24</Tb>
<alpha>2</alpha>
<beta>0</beta>
<Scrit>4081</Scrit> <!-- fit with t0=180 - how can one state that to Phenofit? -->
<timelag>12</timelag> <!-- because the date we fitted was the date at which 50% trees had lost 20% of their leaves) -->
<sigmaSen>150</sigmaSen> <!-- arbitrary value to check -->
</Senescence>
<CompoundBud>2</CompoundBud>
<LeafHabit>1</LeafHabit>
<LeafLifeSpan>1</LeafLifeSpan> <!-- fc+ft-21.2.2023 int, years -->
<LeafType>BROAD_LEAF</LeafType> <!-- fc+ft-21.2.2023 NEEDLE_LEAF or BROAD_LEAF -->
<Tdeath>-90</Tdeath>
<Frost>
<FHfrmax1>-12</FHfrmax1>
<FHfrmax2>-50</FHfrmax2>
<FHminfe>-7</FHminfe>
<FHminfl>-7</FHminfl>
<Te1>10</Te1>
<Te2>-16</Te2>
<FHtfemax>-10</FHtfemax>
<FHtflmax>-10</FHtflmax>
<FHpfemax>-20</FHpfemax>
<FHpflmax>-20</FHpflmax>
<NL1>10</NL1>
<NL2>16</NL2>
</Frost>
<Drought Model="6">
<ppextremelow>258</ppextremelow><!-- 0th quantile -->
<pplow>486</pplow><!-- 5% quantile -->
<pphigh>1380</pphigh><!-- 95% quantile -->
<ppextremehigh>3465</ppextremehigh> <!-- 100% -->
</Drought>
<!-- <Evapotranspiration Model="1"/> -->
</Provenance>
</Species>

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# a species corresondance file for ScriptPhenofitLinker
# forceps sname phenofit4 species file name
AAlb Abies_alba_BLeys2.species
LDec Larix_decidua_DAsse.species
PAbi Picea_abies_partialcalibration.species
PCem Pinus_sylvestris_ADuputie.species
PMon Pinus_sylvestris_ADuputie.species
PSyl Pinus_sylvestris_ADuputie.species
TBac Pinus_sylvestris_ADuputie.species
ACam Corylus_avellana_DAsse.species
APla Corylus_avellana_DAsse.species
APse Corylus_avellana_DAsse.species
AGlu Betula_pendula_DAsse.species
AInc Betula_pendula_DAsse.species
AVir Betula_pendula_DAsse.species
BPen Betula_pendula_DAsse.species
CBet Fagus_sylvatica_EvolLett2019.species
CSat Corylus_avellana_DAsse.species
Cave Corylus_avellana_DAsse.species
FSyl Fagus_sylvatica_EvolLett2019.species
FExc Fraxinus_excelsior_DAsse.species
PNig Betula_pendula_DAsse.species
PTre Betula_pendula_DAsse.species
QPet Quercus_petraea_EvolLett2019.species
QPub Quercus_pubescens_BLeys.Species
QRob Quercus_robur_ADuputie.species
SAlb Betula_pendula_DAsse.species
SAri Betula_pendula_DAsse.species
SAuc Betula_pendula_DAsse.species
TCor Betula_pendula_DAsse.species
TPla Betula_pendula_DAsse.species
UGla Betula_pendula_DAsse.species
Pmar Pinus_pinaster_BackwardVictor.species
Pgra Pinus_pinaster_BackwardVictor.species
Phal Pinus_pinaster_BackwardVictor.species
Ptsu Pseudotsuga_Menziessi_pp2_MBenito_HHA.species
Qile Quercus_ilex_FTauc_ptype2.species
Adec Betula_pendula_DAsse.species
Aeve Quercus_ilex_FTauc_ptype2.species
Geve Larix_decidua_DAsse.species
QRub Quercus_robur_ADuputie.species
QPyr Quercus_robur_ADuputie.species
QSub Quercus_ilex_FTauc_ptype2.species
BPub Betula_pendula_DAsse.species
ACor Betula_pendula_DAsse.species
RPse Fagus_sylvatica_EvolLett2019.species
CAus Fagus_sylvatica_EvolLett2019.species
FOrn Fraxinus_excelsior_DAsse.species
FAng Fraxinus_excelsior_DAsse.species
UMin Betula_pendula_DAsse.species
ULae Betula_pendula_DAsse.species
AMon Corylus_avellana_DAsse.species
AOpa Corylus_avellana_DAsse.species
PAvi Corylus_avellana_DAsse.species
PPad Corylus_avellana_DAsse.species
PSer Corylus_avellana_DAsse.species
PCom Corylus_avellana_DAsse.species
MSyl Corylus_avellana_DAsse.species
SDom Betula_pendula_DAsse.species
SCap Betula_pendula_DAsse.species
SCin Betula_pendula_DAsse.species
SFra Betula_pendula_DAsse.species
SAtr Betula_pendula_DAsse.species
PHis Betula_pendula_DAsse.species
POcc Betula_pendula_DAsse.species
POri Betula_pendula_DAsse.species
JReg Fagus_sylvatica_EvolLett2019.species
ANeg Corylus_avellana_DAsse.species
AAlt Fagus_sylvatica_EvolLett2019.species
OCar Fagus_sylvatica_EvolLett2019.species
PAlb Betula_pendula_DAsse.species
PCan Betula_pendula_DAsse.species
QCer Quercus_petraea_EvolLett2019.species
LAna Fagus_sylvatica_EvolLett2019.species
LAlp Fagus_sylvatica_EvolLett2019.species
CMas Betula_pendula_DAsse.species
AUne Betula_pendula_DAsse.species
STor Betula_pendula_DAsse.species
PCor Pinus_pinaster_BackwardVictor.species
PCal Pinus_pinaster_BackwardVictor.species
PSal Pinus_pinaster_BackwardVictor.species
PPin Pinus_pinaster_BackwardVictor.species
PStr Pinus_pinaster_BackwardVictor.species
PBru Pinus_pinaster_BackwardVictor.species
CAtl Pinus_pinaster_BackwardVictor.species
CSem Pinus_pinaster_BackwardVictor.species
PRad Pinus_pinaster_BackwardVictor.species
ACil Abies_alba_BLeys2.species
THet Larix_decidua_DAsse.species
APin Abies_alba_BLeys2.species
ACep Abies_alba_BLeys2.species
ABor Abies_alba_BLeys2.species
ANor Abies_alba_BLeys2.species
AGra Abies_alba_BLeys2.species
PSit Picea_abies_partialcalibration.species
LKae Larix_decidua_DAsse.species
CLib Pinus_pinaster_BackwardVictor.species
PTae Pinus_pinaster_BackwardVictor.species
IAqu Quercus_ilex_FTauc_ptype2.species
CLae Fagus_sylvatica_EvolLett2019.species
CMon Fagus_sylvatica_EvolLett2019.species
BSem Quercus_ilex_FTauc_ptype2.species
PLat Quercus_ilex_FTauc_ptype2.species
LNob Quercus_ilex_FTauc_ptype2.species
PMah Corylus_avellana_DAsse.species
SNig Betula_pendula_DAsse.species
JCom Pinus_sylvestris_ADuputie.species
JOxy Pinus_sylvestris_ADuputie.species
PSpi Corylus_avellana_DAsse.species
PAng Quercus_ilex_FTauc_ptype2.species
PLen Quercus_ilex_FTauc_ptype2.species
PTer Quercus_ilex_FTauc_ptype2.species