First commit with the code Hector shared with me

phenofit4/phenofitSpeciesCorrespondance.txt

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+# a species corresondance file for ScriptPhenofitLinker	
+# forceps sname	phenofit4 species file name
+AAlb	Abies_alba_BLeys2.species
+LDec	Larix_decidua_DAsse.species
+PAbi	Picea_abies_partialcalibration.species
+PCem	Pinus_sylvestris_ADuputie.species
+PMon	Pinus_sylvestris_ADuputie.species
+PSyl	Pinus_sylvestris_ADuputie.species
+TBac	Pinus_sylvestris_ADuputie.species
+ACam	Corylus_avellana_DAsse.species
+APla	Corylus_avellana_DAsse.species
+APse	Corylus_avellana_DAsse.species
+AGlu	Betula_pendula_DAsse.species
+AInc	Betula_pendula_DAsse.species
+AVir	Betula_pendula_DAsse.species
+BPen	Betula_pendula_DAsse.species
+CBet	Fagus_sylvatica_EvolLett2019.species
+CSat	Corylus_avellana_DAsse.species
+Cave	Corylus_avellana_DAsse.species
+FSyl	Fagus_sylvatica_EvolLett2019.species
+FExc	Fraxinus_excelsior_DAsse.species
+PNig	Betula_pendula_DAsse.species
+PTre	Betula_pendula_DAsse.species
+QPet	Quercus_petraea_EvolLett2019.species
+QPub	Quercus_pubescens_BLeys.Species
+QRob	Quercus_robur_ADuputie.species
+SAlb	Betula_pendula_DAsse.species
+SAri	Betula_pendula_DAsse.species
+SAuc	Betula_pendula_DAsse.species
+TCor	Betula_pendula_DAsse.species
+TPla	Betula_pendula_DAsse.species
+UGla	Betula_pendula_DAsse.species
+Pmar	Pinus_pinaster_BackwardVictor.species
+Pgra	Pinus_pinaster_BackwardVictor.species
+Phal	Pinus_pinaster_BackwardVictor.species
+Ptsu	Pseudotsuga_Menziessi_pp2_MBenito_HHA.species
+Qile	Quercus_ilex_FTauc_ptype2.species
+Adec	Betula_pendula_DAsse.species
+Aeve	Quercus_ilex_FTauc_ptype2.species
+Geve	Larix_decidua_DAsse.species
+QRub	Quercus_robur_ADuputie.species
+QPyr	Quercus_robur_ADuputie.species
+QSub	Quercus_ilex_FTauc_ptype2.species
+BPub	Betula_pendula_DAsse.species
+ACor	Betula_pendula_DAsse.species
+RPse	Fagus_sylvatica_EvolLett2019.species
+CAus	Fagus_sylvatica_EvolLett2019.species
+FOrn	Fraxinus_excelsior_DAsse.species
+FAng	Fraxinus_excelsior_DAsse.species
+UMin	Betula_pendula_DAsse.species
+ULae	Betula_pendula_DAsse.species
+AMon	Corylus_avellana_DAsse.species
+AOpa	Corylus_avellana_DAsse.species
+PAvi	Corylus_avellana_DAsse.species
+PPad	Corylus_avellana_DAsse.species
+PSer	Corylus_avellana_DAsse.species
+PCom	Corylus_avellana_DAsse.species
+MSyl	Corylus_avellana_DAsse.species
+SDom	Betula_pendula_DAsse.species
+SCap	Betula_pendula_DAsse.species
+SCin	Betula_pendula_DAsse.species
+SFra	Betula_pendula_DAsse.species
+SAtr	Betula_pendula_DAsse.species
+PHis	Betula_pendula_DAsse.species
+POcc	Betula_pendula_DAsse.species
+POri	Betula_pendula_DAsse.species
+JReg	Fagus_sylvatica_EvolLett2019.species
+ANeg	Corylus_avellana_DAsse.species
+AAlt	Fagus_sylvatica_EvolLett2019.species
+OCar	Fagus_sylvatica_EvolLett2019.species
+PAlb	Betula_pendula_DAsse.species
+PCan	Betula_pendula_DAsse.species
+QCer	Quercus_petraea_EvolLett2019.species
+LAna	Fagus_sylvatica_EvolLett2019.species
+LAlp	Fagus_sylvatica_EvolLett2019.species
+CMas	Betula_pendula_DAsse.species
+AUne	Betula_pendula_DAsse.species
+STor	Betula_pendula_DAsse.species
+PCor	Pinus_pinaster_BackwardVictor.species
+PCal	Pinus_pinaster_BackwardVictor.species
+PSal	Pinus_pinaster_BackwardVictor.species
+PPin	Pinus_pinaster_BackwardVictor.species
+PStr	Pinus_pinaster_BackwardVictor.species
+PBru	Pinus_pinaster_BackwardVictor.species
+CAtl	Pinus_pinaster_BackwardVictor.species
+CSem	Pinus_pinaster_BackwardVictor.species
+PRad	Pinus_pinaster_BackwardVictor.species
+ACil	Abies_alba_BLeys2.species
+THet	Larix_decidua_DAsse.species
+APin	Abies_alba_BLeys2.species
+ACep	Abies_alba_BLeys2.species
+ABor	Abies_alba_BLeys2.species
+ANor	Abies_alba_BLeys2.species
+AGra	Abies_alba_BLeys2.species
+PSit	Picea_abies_partialcalibration.species
+LKae	Larix_decidua_DAsse.species
+CLib	Pinus_pinaster_BackwardVictor.species
+PTae	Pinus_pinaster_BackwardVictor.species
+IAqu	Quercus_ilex_FTauc_ptype2.species
+CLae	Fagus_sylvatica_EvolLett2019.species
+CMon	Fagus_sylvatica_EvolLett2019.species
+BSem	Quercus_ilex_FTauc_ptype2.species
+PLat	Quercus_ilex_FTauc_ptype2.species
+LNob	Quercus_ilex_FTauc_ptype2.species
+PMah	Corylus_avellana_DAsse.species
+SNig	Betula_pendula_DAsse.species
+JCom	Pinus_sylvestris_ADuputie.species
+JOxy	Pinus_sylvestris_ADuputie.species
+PSpi	Corylus_avellana_DAsse.species
+PAng	Quercus_ilex_FTauc_ptype2.species
+PLen	Quercus_ilex_FTauc_ptype2.species
+PTer	Quercus_ilex_FTauc_ptype2.species