251 lines
6.8 KiB
Plaintext
251 lines
6.8 KiB
Plaintext
# Forceps setup file
|
|
|
|
siteFileName = 01_SITE/forceps.PYR00.site
|
|
|
|
speciesFileName = forceps3.New_species
|
|
|
|
defaultClimateFileName = 02_CLIMATE/Climate/PROJECTIONS/MPI-ESM1-2-HR/ssp245/forceps.MPI-ESM1-2-HRssp245PYR00.climate
|
|
defaultClimateIsDaily = true
|
|
|
|
initDate = 2022
|
|
randomSeed = 123
|
|
|
|
inventory = true
|
|
inventoryFileName = 03_INVENTORY/forceps.PYR00.inv
|
|
|
|
bareGround = false
|
|
bareGroundPatchN = 1
|
|
bareGroundPatchArea = 100
|
|
|
|
equilibriumInitialCanopy = true
|
|
# equilibriumInitialCanopy = false
|
|
|
|
sureauSoilParametersFileName = 04_SOIL/SurEauSoilParameters_PYR00.txt
|
|
|
|
management = true
|
|
managementFileName = 05_MANAGEMENT/forceps.PYR00_R2.management
|
|
|
|
potentialSpeciesList = 0 13 15 17 18 20 21 23 25 31
|
|
|
|
phenofitActivated = true
|
|
phenofitPath = 06_PHENOLOGY/PYR00/
|
|
phenofitSpeciesCorrespondanceFileName = phenofit4/phenofitSpeciesCorrespondance.txt
|
|
|
|
####
|
|
|
|
adaptiveMode = false
|
|
adaptiveInputCompleteExport = inputCompleteExport.adaptive
|
|
# adaptiveVarianceLevel: ADAPTIVE_VARIANCE_LEVEL_LOW, ADAPTIVE_VARIANCE_LEVEL_MEDIUM or ADAPTIVE_VARIANCE_LEVEL_HIGH
|
|
adaptiveVarianceLevel = ADAPTIVE_VARIANCE_LEVEL_LOW
|
|
# adaptiveTradeOffOption: ADAPTIVE_NO_TRADEOFF_OPTION, ADAPTIVE_TRADEOFF_DRTOL_OPTION or ADAPTIVE_TRADEOFF_G_OPTION
|
|
adaptiveTradeOffOption = ADAPTIVE_TRADEOFF_G_OPTION
|
|
adaptiveInventoryPatchN = 50
|
|
adaptiveInventoryPatchArea = 800
|
|
|
|
adaptiveInitial_laSd = 0
|
|
adaptiveInitial_drtolSd = 0
|
|
adaptiveInitial_gSd = 0
|
|
#adaptiveInitial_laSd = 0.03
|
|
#adaptiveInitial_drtolSd = 0.1
|
|
#adaptiveInitial_gSd = 5
|
|
|
|
adaptiveExtraVariance_drtol = 0.03
|
|
adaptiveExtraVariance_g = 5
|
|
|
|
# fc+ld-8.11.2022
|
|
adaptiveConstantVarianceMode = false
|
|
adaptiveConstantVariance_laSd = 0.8
|
|
adaptiveConstantVariance_gSd = 32
|
|
adaptiveConstantVariance_drtolSd = 0.03
|
|
|
|
adaptiveMultiNormalCorrelation_g_la = 0
|
|
adaptiveMultiNormalCorrelation_drtol_g = -0.5
|
|
adaptiveMultiNormalCorrelation_la_drtol = 0
|
|
|
|
adaptiveTreeReproductionWeight = true
|
|
|
|
adaptiveReadSpeciesParametersInCompleteExport = false
|
|
|
|
################### adaptive2 ###################
|
|
|
|
# User must choose adaptiveMode or adaptive2Mode but not both
|
|
|
|
adaptive2Mode = false
|
|
adaptive2FileName = forcepsAdaptive2.trait
|
|
|
|
#####################################################
|
|
|
|
# fc+ld-4.1.2023
|
|
adaptiveHeritability = 0.3
|
|
regenerationForclimLike_withMigration = false
|
|
# ld-3.7.2023 Added a migration multiplicator to control the number of migrant per patch each year
|
|
migrationFactor = 1
|
|
|
|
#distProba = 0.5
|
|
distProba = 0.005
|
|
#distProba = 0
|
|
|
|
#deathProbaCoef = 0
|
|
deathProbaCoef = 4.605
|
|
|
|
#slowGrowthProba = 0
|
|
slowGrowthProba = 0.368
|
|
|
|
slowGrowthTime = 2
|
|
|
|
# If true, trees get a real crown length
|
|
crownLengthOption = true
|
|
crownLengthImpactOnGrowth = true
|
|
|
|
# Regeneration: one option out of these 3 must be selected
|
|
|
|
regenerationMaxTreesPerPatchOption = false
|
|
regenerationMaxTreesPerPatchNumber = 50
|
|
regenerationMaxTreesPerPatchWithNTries = false
|
|
regenerationMaxTreesPerPatchNTries = 5
|
|
|
|
regenerationSeedlingsPerPatchOption = false
|
|
regenerationSeedlingsPerPatchNumber = 100
|
|
|
|
regenerationForclimLike = true
|
|
|
|
|
|
regelibActivated = false
|
|
regelibFileName =
|
|
|
|
|
|
# Regeneration: additional options
|
|
|
|
regenerationActualSpeciesOnly = false
|
|
regenerationActualSpeciesOnlyAtPatchLevel = false
|
|
regenerationConstraint = true
|
|
# fc+xm+lv-10.5.2021 added regenerationActualSpeciesOnlyAbundance
|
|
regenerationActualSpeciesOnlyAbundance = false
|
|
# fc+ld-24.2.2023 addedregenerationSpeciesContributionsBasedAbundance
|
|
regenerationSpeciesContributionsBasedAbundance = false
|
|
|
|
establishmentProbabilityCoef = 0.1
|
|
establishmentProbabilityCoef = 0.1
|
|
|
|
ppMothActivated = false
|
|
ppMothRegionalPercentageOfInfestedTreesOption = false
|
|
ppMothRegionalPercentageOfInfestedTrees = 0.12
|
|
|
|
variability = false
|
|
variabilityFileName = forceps.fitnessVariability
|
|
|
|
climaticFitness = false
|
|
fitnessImpactsGrowth = false
|
|
|
|
#droughtStressOption = FORCLIM_LIKE_DROUGHT_STRESS
|
|
droughtStressOption = PATCH_LEVEL_DROUGHT_STRESS
|
|
|
|
#trunkVolumeOption = FORCLIM_TRUNK_VOLUME
|
|
trunkVolumeOption = EMERGE_TRUNK_VOLUME
|
|
|
|
leafLossImpactOnGrowthFactor = 0.5
|
|
frostLeafLossImpactOnLAI = true
|
|
|
|
reproductiveSuccessImpactOnRege = true
|
|
|
|
|
|
# Extra options
|
|
canopyLayerThickness = 1
|
|
|
|
crownA1ReversionFactor = 0.05
|
|
|
|
variableAllometry = true
|
|
|
|
treeHeightFromInventory = true
|
|
|
|
conicalCanopyShadows = true
|
|
|
|
equilibriumError = 0.05
|
|
|
|
layeredCrownAndHeightPlasticityCalculation = true
|
|
|
|
speciesCrownShapeParameters = true
|
|
|
|
speciesSpecificLeafArea = true
|
|
|
|
densityDependentLightAttenuation = true
|
|
|
|
leafPhenologyImpactOnLightCompetition = true
|
|
leafPhenologyImpactOnLightCompetition_GDDweights = false
|
|
|
|
percentOfRainExclusion = 0
|
|
|
|
|
|
# deadWoodModule
|
|
deadWoodActivated = true
|
|
initialLitterBiomassInformation = initialLitterBiomass()
|
|
#initialLitterBiomassInformation = initialLitterBiomass(Phal(2000000,5))
|
|
#initialLitterBiomassInformation = initialLitterBiomass(kSName_1(Biomass_kg_ha,mean_diameter_cm);kSName_2(Biomass_kg_ha,mean_diameter_cm))
|
|
|
|
yassoActivated = true
|
|
yassoParametersFileName = yassoParameters.txt
|
|
yassoSpeciesFileName = YassoSpeciesParameters.csv
|
|
|
|
soilCarbonEquilibriumInitialization = false
|
|
soilCarbonInitializationInformation = soilCarbonInitializationInformation(5000;1970;2020;2;0;0)
|
|
#soilCarbonInitializationInformation = soilCarbonInitializationInformation(calibrationYearLength;climateStartYear;climateEndYear;yearlyMortalityPercentRate;yearlyCutPercentRate;extractedBranchPercentage)
|
|
|
|
canopyStructureMemory = true
|
|
microClimateActivated = true
|
|
|
|
activateTREMCalculator = true
|
|
|
|
|
|
# Options for Sureau linking
|
|
|
|
sureauActivated = true
|
|
|
|
sureauExplicitScheme = false
|
|
|
|
sureauSmallTimeStep = 1200
|
|
|
|
sureauTimeStep = 1
|
|
|
|
sureauClassNbPerSpecies = 10
|
|
|
|
sureauMortalityModule = true
|
|
|
|
sureauGrowthModule = true
|
|
|
|
|
|
# WRITING_DISABLED, WRITING_FREQUENCY_YEAR, WRITING_FREQUENCY_DAY, or a number of seconds
|
|
sureauWritingFrequency = WRITING_FREQUENCY_DAY
|
|
|
|
yearToYearPLC = true
|
|
|
|
growthToCavitationRepairConversionFactor = 1
|
|
|
|
droughtInducedDefoliation = true
|
|
|
|
droughtInducedDefoliationImpactOnGrowth = true
|
|
|
|
droughtInducedDefoliationImpactOnLightCompetition = true
|
|
|
|
explicitRootLength = true
|
|
rootLengthPlasticity = true
|
|
|
|
cavitationMortalityTresholdPercentage = 20
|
|
|
|
# Can be set either to a number of years > 1 or to -1. In wase -1 is used, no delay is involved and mortality from PLC is evaluated each year
|
|
plcMortalityDelayYear = -1
|
|
|
|
# If true, must be used with plcMortalityDelayYear = 1 is false, plcMortalityDelayYear must be a different int than 1
|
|
resetPLCAfterMortalityTest = false
|
|
|
|
sureau_drtolFromSMRI = false
|
|
|
|
# LAI_BASED_TRUNK_INTERFACE_AREA_OPTION, AGGREGATE_TRUNK_INTERFACE_AREA_OPTION, SUMMED_TRUNK_INTERFACE_AREA_OPTION
|
|
|
|
sureauTrunkInterfaceAreaOption = LAI_BASED_TRUNK_INTERFACE_AREA_OPTION
|
|
|
|
# SPECIFIC_TO_TREE_TYPE, GROWTH_BASED_ONLY (original method implemented by Tanguy) or SPECIFIC_TO_TREE_TYPE_GROWTH_DEPENDENT (mix of both methods)
|
|
cavitationReparationMethod = GROWTH_BASED_ONLY
|
|
|
|
rootDepthEquilibriumCalibration = false
|
|
rootDepthInitializationInformation = rootDepthInitializationInformation()
|